Determinants of Zika transmission and control H Clapham, The Journal of infectious diseases2018

Modeling tuberculosis dynamics with the presence of hyper-susceptible individuals for Ho Chi Minh City from 1996 to 2015 DN Vinh, DTM Ha, NT Hanh, G Thwaites, MF Boni, HE Clapham, ...BMC infectious diseases 18 (1), 494 2018

Methods to discriminate primary from secondary dengue during acute symptomatic infection THT Nguyen, HE Clapham, KL Phung, TK Nguyen, THQ Nguyen, VN Tran, ...BMC infectious diseases 18 (1), 375 2018

Vaccine-preventable diseases in lower-middle-income countries HC Turner, GE Thwaites, HE ClaphamThe Lancet Infectious Diseases 18 (9), 937-9392 2018

The Estimates of the Health and Economic Burden of Dengue in Vietnam TM Hung, HE Clapham, AA Bettis, HQ Cuong, GE Thwaites, BA Wills, ...Trends in parasitology

Turner, H.C.,   Wills, B.A.,  Rahman, M.   Cuong, H.Q.,  Thwaites, G.E.,   Boni, M.F. &  Clapham, H.E. Projected costs associated with school-based screening to inform deployment of Dengvaxia: Vietnam as a case study (Transactions of The Royal Society of Tropical Medicine and Hygiene, July 2018, try057,

ten Bosch, Q.A., Clapham, H.E., Lambrechts, L., Duoung, V. ,Buchy, P, Althouse, B.M., Lloyd, A.L., Waller, L.A. , Morrison, A.C., Kitron, U., Vazquez-Prokopec, G.M., Scott, T.W. & Perkins, T.A.,  Contributions from the silent majority dominate dengue virus transmission (PLoS Pathogens, May 2018,

Quan, T.M. , Phuong, H.T., Vy, N.H.T., Thanh, N.T.T., Lien, N.T.N., Hong, T.T.K., Dung, P,.N., Chau, N.V.V., Boni, M.F. & Clapham, H.E., Evidence of previous but not current transmission of chikungunya virus in southern and central Vietnam: Results from a systematic review and seroprevalence study in four locations (PLoS NTDs, February 2018, )

Clapham, H.E., Cummings, D.A.T and Johansson M.A., Immune status alters the probability of apparent illness due to dengue virus infection: evidence from a pooled analysis across multiple cohort and cluster studies, (PLoS NTDs, 2017 September,

Cauchemez ,S. Nouvellet, P., Cori, A., Jombart,T., Garske, T., Clapham, H., Moore, S., Mills, H.L., Salje, H., Collins, C., Rodriquez-Barraquer, I., Riley, S.,, Truelove, S., Algarni, H., Alhakeem, R., AlHarbi, K., Turkistani, T., Aguas, R.J., Cummings, D.A.T., Van Kerkhove, M.D., Donnelly, C.A., Lessler,, J., Fraser, C., Al-Barrak, A., Ferguson, N.M. Unravelling the drivers of MERS-CoV transmission (Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9081-6. doi: 10.1073/pnas.1519235113.)

 Clapham, H.E, Than Ha Quyen, Duong Thi Hue Kien, Simmons, C.P. & Ferguson, N.M. Modelling Virus and Antibody Dynamics during Dengue Virus Infection Suggests a Role for Antibody in Virus Clearance (PLoS Comput Biol. 2016 May 23;12(5):e1004951. doi: 10.1371/journal.pcbi.1004951.)

Reich, N.G., Lauer, S., Sakrejda, K., Iamsirithaworn, S., Hinjoy, S., Sugantho, P. Suthachana, S., Clapham, H.E., Salje, H., Cummings D.A.T., Lessler, J. Challenges in real-time prediction of infectious disease: a case study of dengue in Thailand (PLoS Negl Trop Dis. 2016 Jun 15;10(6):e0004761. doi: 10.1371/journal.pntd.0004761.)

Nisalak, A.*, Clapham, H.E.*, Kalayanarooj, S, Klungthong, C., Butsaya Thaisomboonsuk, B., Fernandez, S., Reiser, J., Srikiatkhachorn, A., Macareo, L.R., Lessler, J.T., Cummings, D.A.T, Yoon. I.  Forty years of dengue surveillance at a tertiary pediatric hospital in Bangkok, Thailand, 1973 to 2012 (Am J Trop Med Hyg. 2016 Jun 1; 94(6):1342-7. doi: 10.4269/ajtmh.15-0337.)

Alera,M.T, Srikiatkhachorn, A., Velasco, J.M., Tac-An, I.A., Lago, C.B., Clapham, H.E., Fernandez, S., Levy, J.W., Thaisomboonsuk, B., Klungthong, C., Macareo, L.R., Nisalak, A., Hermann, L., Villa, D., & Yoon, I. Incidence of dengue virus infection in adults and children in a prospective longitudinal cohort in the Philippines (PLoS Negl Trop Dis. 2016 Feb 4;10(2):e0004337. doi: 10.1371/journal.pntd.0004337.)

Lessler J, Salje H, Van Kerkhove MD, Ferguson NM, Cauchemez S, Rodriquez-Barraquer I, Hakeem R, Jombart T, Aguas R, Al-Barrak A, Cummings DA. MERS-CoV Scenario and Modeling Working Group, Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia (Am J Epidemiol. 2016 Apr 1;183(7):657-63. doi: 10.1093/aje/kwv452.)

Clapham, H.E., Nisalak, A., Kalayanarooj, S, Thaisomboonsuk, B., Klungthong, C., Fernandez, S., Srikiatkhachorn, A., Macareo, L.R., Lessler, J.T.,  Reiser, J., Cummings, D.A.T, Yoon. I.  Epidemiology of Infant Dengue Cases Illuminates Serotype-Specificity in the Interaction between Immunity and Disease, and Changes in Transmission Dynamics (PLoS Negl Trop Dis. 2015 Dec 11;9(12):e0004262. doi: 10.1371/journal.pntd.0004262.)

Althouse, B.M., Scarpino, S.V., Ancel Meyers, L. , Ayers, J.W., Bargsten, M., Baumbach, J., Brownstein, J.S., Castro, L., Clapham, H., Cummings, D.A.T., Del Valle, S., Eubank, S., Fairchild, G., Finelli, L., Generous, N., George, D., Harper, D.R., Hébert-Dufresne, L., Johansson, M.A., Konty, K., Lipsitch, M., Milinovich, G., D Miller, J.D., O Nsoesie, E., Olson, D.R., Paul, M., Polgreen, P.M., Priedhorsky, R., Read, J.M., Rodríguez-Barraquer, I., Smith, D.J., Stefansen, C., Swerdlow, D.L., Thompson, D., Vespignani, A., Wesolowski, A. Enhancing disease surveillance with novel data streams: challenges and opportunities (EPJ Data Science 2015 4:17. doi: 10.1140/epjds/s13688-015-0054-0)

Clapham, H.E., Rodriguez- Barraquer, I , Azman, A.S., Althouse, B.M., Salje, H., Kalayanarooj, S., Gibbons, R.V., Jarman, R.G., Nisalak, A., Thaisomboonsuk, B., Nimmannitya, S., Yoon, I., Alan Rothman, A. & Cummings, D.A.T. Dengue Virus (DENV) Neutralizing Antibody Kinetics in Children After Symptomatic Primary and Postprimary DENV Infection (J Infect Dis. 2016 May 1;213(9):1428-35. doi: 10.1093/infdis/jiv759.)

Ferguson NM, Hue Kien DT, Clapham H, Aguas R, Trung VT, Bich Chau TN, Popovici J, Ryan PA, O'Neill SL, McGraw EA, Long VT, Dui le T, Nguyen HL, Vinh Chau NV, Wills B & Simmons CP. Modeling the impact on virus transmission of Wolbachia-mediated blocking of dengue virus infection of Aedes aegypti (Sci Transl Med. 2015 Mar 18;7(279):279ra37. doi: 10.1126/scitranslmed.3010370.)

Lessler J, Rodriguez-Barraquer I, Cummings DA, Garske T, Van Kerkhove M, Mills H, Truelove S, Hakeem R, Albarrak A, Ferguson NM; MERS-CoV Scenario Modeling Working Group, Estimating Potential Incidence of MERS-CoV Associated with Hajj Pilgrims to Saudi Arabia, 2014 (PLoS Curr. 2014 Nov 24;6. pii: ecurrents.outbreaks.c5c9c9abd636164a9b6fd4dbda974369. doi: 10.1371/currents.outbreaks.c5c9c9abd636164a9b6fd4dbda974369.)

Clapham, H.E., Tricou, V., Nguyen Van Vinh Chau, Simmons, C.P. & Ferguson, N.M. Within host viral dynamics of dengue serotype 1 infection (J R Soc Interface. 2014 Jul 6;11(96). pii: 20140094. doi: 10.1098/rsif.2014.0094.)

Conference Presentations

Conference for Next generation Informatics for Global Health, 2017, Hong Kong, The use of serological data in understanding past and predicting future transmission of arboviruses in Vietnam

Epidemics 5, 2015, Clearwater, Evidence for transmission enhancement in incidence patterns of dengue in Thailand

ASTMH conference 2015, Philadelphia, Trends in cases of dengue in infants: insights into serotype differences in disease in naive and non-naive individuals and population transmission dynamics

ASTMH conference 2012, Atlanta, Considering the Role of Antibody in Dengue Virus Clearance: Data Analysis and Modelling

ASTMH conference 2011, Philadelphia, Modelling Dengue Pathogenesis, Considering Differences Between Primary and Secondary Infection.

Poster Presentations

Gordon Research Conference and Seminar on Tropical Infectious Diseases, 2014 Galveston

ASTMH conference 2014, New Orleans

Epidemics 3 2011, Boston